Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPNILDSLWNSMALFLSALFFHGMALRSIREKKPAWFQIKFANEFINYALGIYYGLLGVYFIIRGLPGTDSGIYTDMLLNILIVLHLFSSAGPATIALLLIVSGKLFLGDALFANLIYVFLIIGFHFVCMEVAKLRLSSVQKVVLVKLSAIPLMLFYLHQKIHLAYTMNDLPVWILYFLVSFFITFIIVSAAYYIDTSNKLIYDLQQSTILDPLTGLTNFRHFENAFDAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGNGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIVASGSVITISAGIANYDGRNYPSA--NELLNAADQALYNAKRNGRNQVHIRETEPVI |
4H54 Chain:A ((122-293)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNA--EPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVY-RYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVS----RAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4H54.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101477 for 1285 contacts (-79.0/contact) +
2D Compatibility (PS) -18613 + (NN) -11550 + (LL) 18740
1D Compatibility (HY) -14400 + (ID) 3100
Total energy: -130400.0 ( -101.48 by residue)
QMean score : 0.485
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