Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQIDKQKIADAVKVILEAVGENPDREGLIDTPMRVARMY-EEVFAGLKKD--PSVHFDTIFEEQH--EELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAGLSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPGTKTITSAVRGAFKNDDKLRSEVLALIKHN
4DU6 Chain:A ((59-222))
--------------------------DSLADTPRRIAKMYVDEIFSGLDYENFPKI---TLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDS-VIGLSKINRIVQFFAQRPQVQERLTQQILLALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVRHH
General information:
TITO was launched using:
RESULT:
Template:
4DU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96245 for 1190 contacts (-80.9/contact) +
2D Compatibility (PS) -17388 + (NN) -3452 + (LL) 2428
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -129757.0 ( -109.04 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4DU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DU6-query.scw
PDB file :
Tito_Scwrl_4DU6.pdb
: