Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRF--EPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
1KDP Chain:A ((8-224))
------ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG-EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKL--
General information:
TITO was launched using:
RESULT:
Template:
1KDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119870 for 1744 contacts (-68.7/contact) +
2D Compatibility (PS) -23544 + (NN) -12611 + (LL) 460
1D Compatibility (HY) -13200 + (ID) 4650
Total energy: -173415.0 ( -99.44 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1KDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDP-query.scw
PDB file :
Tito_Scwrl_1KDP.pdb
: