Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDLVNTKMNALPQDMMKILHMDSMADLTNIDAYFAY---VFQYIFIAACVYAALIGAQALIKEETDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFLASVALVLFLKPSGVDGGNLVMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDKVDFFKYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV |
1TFJ Chain:A ((16-219)) | EHLLRPLPADKQIE--------------TGPFLEAVSH------LPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAE--------------------------WPKVG--ATLALMWLKRGLRFIQVFLQSICDGERDENHP-NLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAP-------------------YKSDFLKALSKGQNVTEEECLEKVRLFLVNYTA--TIDVIYEMYTRMNAELNYKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TFJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139977 for 1523 contacts (-91.9/contact) +
2D Compatibility (PS) -20488 + (NN) -2785 + (LL) 7096
1D Compatibility (HY) -4800 + (ID) 1950
Total energy: -162904.0 ( -106.96 by residue)
QMean score : 0.210
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