Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVAFSQTNDYSEI-TKQISQSAAEYLEEIIHDGDILGVSWGTTMYKIAQKL-SPLKAEIKVVQLKGGVSHSDVNTYAAETLALFGAAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFS-DQEKARLKEKAVGDICSRFFTIDGEIADEKMDERTIGINLQELKQKETAILVAGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN |
| 2GNP Chain:A ((7-263)) | ----------------------------------------------------------TNMFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEED--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134444 for 2125 contacts (-63.3/contact) +
2D Compatibility (PS) -28253 + (NN) -11680 + (LL) 5008
1D Compatibility (HY) -14800 + (ID) 3650
Total energy: -187819.0 ( -88.39 by residue)
QMean score : 0.536
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