Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------VSLYMLVSTFAVAFIITVIGVPLFIPFL---VKLKFGQSIRDEGPKMHEK-KSGTPTMGAVVFITAMLISFLVFSFISGEVSAA-----------TWLLFIALALFGALGFL----------DDYIKVVQKRNLGLTSKQKF--LGQVVISILFYLVYHFND-------------FAETLNIPFTNIEVDLGW------FFVIFILFWLVGFSNAVNLTDGLDGLVSGLSVIAFS-------AFGVIAFYQE-------------QMDVAIFCFAIVGG--------------MLGFLLFNKNP------AKIFMGDTGSLALGGSIAAISIL---------VHQEWLLLLIGI-------IFVIETASVILQVFYFKATG------GKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAII--SVCVVIF-- |
| 4U1D Chain:A ((9-496)) | FRPENAIKRADELISVGEKQAALQSLHDFITARRIRWATPSTVEPVVFKFLEIGVELKKGKLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEIDAITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKKTMHFCLKYQRKNEFKRLAEMLRQHLDAANYQQSKSGNNLVDLSDADTLQRYLDQRFQQVDVSVKLELWHEAYRSIEDVFHLMKISKRAPKPSTLANYYENLVKVFFVSGDPLLHTTAWKKFYKLYSTNPRATEEEFKTYSSTIFLSAISTQLDEIPSIGYDPHLRMYRLLNLDAKPTRKEMLQSIIEDESIYGKVDEELKELYDIIEVNFDVDTVKQQLENLLVKLSSKTYFSQYIAPLRDVIMRRVFVAASQKFTTVSQSELYKLATLPAPLDLSAWDIEKSLLQAAVEDYVSITIDHESAKVTFAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -320187 for 2248 contacts (-142.4/contact) +
2D Compatibility (PS) -33430 + (NN) -14941 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 3050
Total energy: -388808.0 ( -172.96 by residue)
QMean score : 0.223
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