Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDP--DG-E-----EYQKAVQSLYAIAYTIKMSKMGETRLNGYADFVVPPLEGFWWSEEKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVAQKKKPDVDTSRVKLVRFEEGECVQMMHIGPFSEEVKTVAELH-QFMETEGLHNDTGAVRKHHEIYLSDPRKADPEKMKTILRLPVS
1D5Y Chain:A ((122-286))
-----------------TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT----IPP-------------VLYGLNETRPSQDKDDEQEVFYTTALAQDQAD------------------GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRK---GQDIERYYPAED-DRPINLRCELLIPIR
General information:
TITO was launched using:
RESULT:
Template:
1D5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31069 for 1064 contacts (-29.2/contact) +
2D Compatibility (PS) -15847 + (NN) -1870 + (LL) 4608
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -48078.0 ( -45.19 by residue)
QMean score : 0.295
(partial model without unconserved sides chains):
PDB file :
Tito_1D5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D5Y-query.scw
PDB file :
Tito_Scwrl_1D5Y.pdb
: