Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
3GW8 Chain:A ((11-236))
-KLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHYYL--
General information:
TITO was launched using:
RESULT:
Template:
3GW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89916 for 1858 contacts (-48.4/contact) +
2D Compatibility (PS) -24496 + (NN) -8688 + (LL) 196
1D Compatibility (HY) -22000 + (ID) 6900
Total energy: -151804.0 ( -81.70 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3GW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GW8-query.scw
PDB file :
Tito_Scwrl_3GW8.pdb
: