Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEK------VVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY |
3VVD Chain:A ((38-256)) | ------------------------------------IRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERL-GLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGV---IVSRKGGPRTAKDLQGKVV---GVQVGTTYMEAAQKIPGIKEVRTY--QRDPDALQDLLAGRIDTWITDRFVA-----KEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75625 for 1775 contacts (-42.6/contact) +
2D Compatibility (PS) -22832 + (NN) -5302 + (LL) 3876
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -117083.0 ( -65.96 by residue)
QMean score : 0.557
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