Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEK------VVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY
3VVD Chain:A ((38-256))------------------------------------IRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERL-GLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGV---IVSRKGGPRTAKDLQGKVV---GVQVGTTYMEAAQKIPGIKEVRTY--QRDPDALQDLLAGRIDTWITDRFVA-----KEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED------


General information:
TITO was launched using:
RESULT:

Template: 3VVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75625 for 1775 contacts (-42.6/contact) +
2D Compatibility (PS) -22832 + (NN) -5302 + (LL) 3876
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -117083.0 ( -65.96 by residue)
QMean score : 0.557

(partial model without unconserved sides chains):
PDB file : Tito_3VVD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VVD-query.scw
PDB file : Tito_Scwrl_3VVD.pdb: