Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVTNIVKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEEIFNLEGE
2LYP Chain:A ((1-66))
-MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE
General information:
TITO was launched using:
RESULT:
Template:
2LYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32128 for 468 contacts (-68.6/contact) +
2D Compatibility (PS) -7111 + (NN) -3922 + (LL) 192
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -52869.0 ( -112.97 by residue)
QMean score : 0.843
(partial model without unconserved sides chains):
PDB file :
Tito_2LYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYP-query.scw
PDB file :
Tito_Scwrl_2LYP.pdb
: