Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALF-LQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
4Y8F Chain:A ((4-249))
MRTPIIAGNWKMHYTIDEAVKLVEELKPLV--KDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASLVAADFAQIV----
General information:
TITO was launched using:
RESULT:
Template:
4Y8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120145 for 2075 contacts (-57.9/contact) +
2D Compatibility (PS) -26754 + (NN) -10851 + (LL) 336
1D Compatibility (HY) -21600 + (ID) 7250
Total energy: -186264.0 ( -89.77 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4Y8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y8F-query.scw
PDB file :
Tito_Scwrl_4Y8F.pdb
: