Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNLKVYSDKNAKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRK--HKTKVNRKFRDKGAERDYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYGLIETN
1L4S Chain:A ((3-95))
----NITSKQMEITPAIRQHVADRLAKLEKW--QTHLINPHIILS-KEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARR-----------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34188 for 569 contacts (-60.1/contact) +
2D Compatibility (PS) -10111 + (NN) -2562 + (LL) 5184
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -47727.0 ( -83.88 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1L4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4S-query.scw
PDB file :
Tito_Scwrl_1L4S.pdb
: