Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGKTVEELLG
4YHH Chain:E ((1-148))
----------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
4YHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58467 for 1134 contacts (-51.6/contact) +
2D Compatibility (PS) -16027 + (NN) -4446 + (LL) 932
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -93958.0 ( -82.86 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4YHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHH-query.scw
PDB file :
Tito_Scwrl_4YHH.pdb
: