Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKANDIRDLSTTEIQDQEKALKEELFNLR-FQLATGQLENTARIREVRKAIARMKTIVRERELA
1JJ2 Chain:U ((3-59))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTI-------
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1329 for 307 contacts (-4.3/contact) +
2D Compatibility (PS) -6294 + (NN) -3008 + (LL) 920
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -14261.0 ( -46.45 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: