Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIAAFDIGGTALKMGVVLPHGEIILT-KSAEISGSDG--DQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMFSERPGAF----RPGKYTLNETTTMLV-LRRQYAELTGR-----------PLEEITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQEENRHE |
3VGK Chain:A ((7-269)) | -----VDIGGTKIAAGVVDEEGRILSTFKVATPPTAEGIVDAICAAV-AGASEGHDVEAVGIGAAGYVDDKRATVLFAPNI-DWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELV------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145298 for 1869 contacts (-77.7/contact) +
2D Compatibility (PS) -26505 + (NN) -17594 + (LL) 4336
1D Compatibility (HY) -10800 + (ID) 4200
Total energy: -200061.0 ( -107.04 by residue)
QMean score : 0.377
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