Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLDEESIFKHPEV-KQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTTFDEAF---FNELMQQFELPMKAKLMS----FSKGRKALFFIILAFSLNVRFLLLDEPLDGLDIIIKKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPGFVKNNAQLLYRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI |
| 4RVC Chain:A ((4-222)) | LEVKDLSGGYTAQNVLEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRL--ERRLSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQ-KAKGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDIR--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RVC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161258 for 1626 contacts (-99.2/contact) +
2D Compatibility (PS) -22419 + (NN) -4587 + (LL) 7392
1D Compatibility (HY) -17200 + (ID) 2800
Total energy: -200872.0 ( -123.54 by residue)
QMean score : 0.531
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