Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNH-MDKDVFRRDLGSLTDVYQVVLEKLIAL
4O7R Chain:A ((11-231))
---------KAKKMIPIDDDKLIME-FKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLD-EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGE
General information:
TITO was launched using:
RESULT:
Template:
4O7R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53504 for 1690 contacts (-31.7/contact) +
2D Compatibility (PS) -23352 + (NN) -2641 + (LL) 816
1D Compatibility (HY) -22000 + (ID) 5350
Total energy: -106031.0 ( -62.74 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4O7R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O7R-query.scw
PDB file :
Tito_Scwrl_4O7R.pdb
: