Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLFKTIGIIGGGQLGQMMAIAAIYMGHKVITLDPASDCSASRVSEVIVAPYDDVEALGQLAARCDVLTYEFENVDADGLDAVVSAGQLP--QGTDLLRISQNRIFEKDFLANKAGVTVAPYKVVTSSLDLE-GFD-LTKTYVLKTATGGYDGHGQKVIRSAEDLPEAQQLANSAECVLEEFVDFDLEISVI-VSGNGQDVTVFPVQENIHRNNILSKTIVPAR-ISDQLADKAKKMAVQIAKELQLSGTLCVEMFVTADDIIVNEIAPRPHNSGHYSIEACDFSQFDTHILGVLGQPLPPIKLHAPAVMLNVLGQHVQQAIDYVAENPSAHLHIYGKLEAKHNRKMGHVTVFTEDADEVEEF |
| 3AW8 Chain:A ((12-351)) | ----------------RMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVPVEA--ARRLEGRLPLYPPAKALEVAQDRLREKTFFQG-LGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRG------QALVRTEEEALEALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVGEELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPLGSTAPRGQSAMVNLIGE--KPPFAEVLKVEGAHLHWYGK-AVRPGRKVGHITLRRDGLKALEEG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145756 for 2669 contacts (-54.6/contact) +
2D Compatibility (PS) -36290 + (NN) -18293 + (LL) 720
1D Compatibility (HY) -22800 + (ID) 5850
Total energy: -228269.0 ( -85.53 by residue)
QMean score : 0.400
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