Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIIVHAFINSGKIGVVEV----LFATSDDKLLMTKMSEFQRHYPGDYLAIYDLPLDTDLNKLSHYPSVAISKEDFHEEKANETNENS
1SVD Chain:M ((52-91))
-------------MNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYRGN-----------------
General information:
TITO was launched using:
RESULT:
Template:
1SVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7124 for 137 contacts (-52.0/contact) +
2D Compatibility (PS) -3745 + (NN) -1437 + (LL) 1824
1D Compatibility (HY) -4000 + (ID) 150
Total energy: -14632.0 ( -106.80 by residue)
QMean score : 0.073
(partial model without unconserved sides chains):
PDB file :
Tito_1SVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVD-query.scw
PDB file :
Tito_Scwrl_1SVD.pdb
: