Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLSVE--SRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCDGG------VPDPWYTGD--FEETYRLVNDGCKQWLTLINNSRD
4LRQ Chain:A ((2-146))
-QKVLVVCMGNICRSPTAEAVLRAKAAQLKVDVEVDSAGTIGYHQGNPPDARSKAAGEKRGYSFSGIK-ARKIRDEDFVKFDWILAADQENLAELKARCPQSHQHKLSLMLSHSDSEYQEIPDPYYGGERGFELVLDLVEDAAEQFLLKL-----
General information:
TITO was launched using:
RESULT:
Template:
4LRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72577 for 1121 contacts (-64.7/contact) +
2D Compatibility (PS) -14619 + (NN) -6421 + (LL) 308
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -104909.0 ( -93.59 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_4LRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LRQ-query.scw
PDB file :
Tito_Scwrl_4LRQ.pdb
: