Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKDNAVELEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVEAAKKNMVEVPMVGTTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISVSDLA
4YHH Chain:E ((1-148))
--------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQA
General information:
TITO was launched using:
RESULT:
Template:
4YHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64637 for 1134 contacts (-57.0/contact) +
2D Compatibility (PS) -15774 + (NN) -2496 + (LL) 728
1D Compatibility (HY) -12800 + (ID) 4150
Total energy: -99129.0 ( -87.42 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4YHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHH-query.scw
PDB file :
Tito_Scwrl_4YHH.pdb
: