Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
2QAJ Chain:A ((1-216))
MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD-CERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLEGLK
General information:
TITO was launched using:
RESULT:
Template:
2QAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66673 for 1650 contacts (-40.4/contact) +
2D Compatibility (PS) -23163 + (NN) -13221 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 6200
Total energy: -131853.0 ( -79.91 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2QAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QAJ-query.scw
PDB file :
Tito_Scwrl_2QAJ.pdb
: