Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKYVKWLIPISIIGMLLAGCQMNSESKSQSNEVKNSKHSAVKKDKKMTKKEQLVYLNEHEQ
1MKC Chain:A ((62-104))
CKYKFENW-----------GACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC---------
General information:
TITO was launched using:
RESULT:
Template:
1MKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 32652 for 253 contacts (129.1/contact) +
2D Compatibility (PS) -4221 + (NN) 590 + (LL) 2140
1D Compatibility (HY) 400 + (ID) 350
Total energy: 31211.0 ( 123.36 by residue)
QMean score : 0.058
(partial model without unconserved sides chains):
PDB file :
Tito_1MKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKC-query.scw
PDB file :
Tito_Scwrl_1MKC.pdb
: