Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGT------AHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVD-----MHGHDFL------------------------PFND-----IEESVREDVAKLHASPLI----PNDVVISGAIYDVDTGRMVEVK
3VRK Chain:A ((7-210))
-----DALLENNRLYAGGQATHRPGHPGMQPIQPSRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVINEDAIRCLIISHHLLNTHEIILVHHTRCGMLAFTDDLLRAGLEGDAAAEKLIGQATGRAFVSAGKASASPAAFQAFRGPPEPLDAPRSDASTERIAADVRRGLSIILNHPWLPTAGPDAITVRGFIYDVDTGRLEEVS
General information:
TITO was launched using:
RESULT:
Template:
3VRK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101124 for 1129 contacts (-89.6/contact) +
2D Compatibility (PS) -17588 + (NN) -11184 + (LL) 536
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -146360.0 ( -129.64 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_3VRK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VRK-query.scw
PDB file :
Tito_Scwrl_3VRK.pdb
: