Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKILLSLFTALLITFGGMTSIQADEYLRVGMEAAYAPFNWTQNDNTNGAVPIEGTDQYANGYDVQVAKKLAKKLNKKVVVVKTKWEGLVPALTSGKLDMIIAGMSPTEERKKEINFSKPYYISEPTLVVNAEGKYTNAKNISDFKNAKV---TAQQGVYLYNLIDQINGVKKEVAMGDFNQLRQA---VESGVVDAYVSERPDATSAQTANPKLKMIELHQGFKTSDADTNISVGMRKGDNR-INQVNQVLESISRDKQIALMDKMIKEQPSVKKEKNGKPNFFEQMATILKNNGSQFLRGTATTLLISMVGTIVGLFIGLLIGVFRTAPKSDNKLKAALQKLLGWLLNIYIEVFRGTPMIVQSMVIYYGTAQAFGVSLDRTLAAIFIVSINTGAYMSEIVRGGIFSVDKGQFEAATALGFTHGQTMRKIVLPQVVRNILPATGNEFVINIKDTSVLNVISVVELYFSGNTVATQTYQYFQTFTIIAIIYFILTFTVTRILRYIEKRFDSDNYTTGANQLQV |
| 4YMX Chain:A ((37-254)) | -------------------------GVIVMGTSADFPPFEFHK---------VEGGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERKKSVDFSDLYYDSRQVVVVK------NDSPISKFDDLKVKTIAVQIGTTSEEAAKKIPNVK----LKQLNRVSDEFMDLQNGRCDAIVVEDTVAKAYLKEYKDMKILYMDE---INNVENGSAVAVAKGNKSLLDVVNEVIKEL---KQSGEYDKLVDKWFKQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80132 for 1692 contacts (-47.4/contact) +
2D Compatibility (PS) -22669 + (NN) -4623 + (LL) 22644
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -104580.0 ( -61.81 by residue)
QMean score : 0.464
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