Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLLDSYKLKQDFPILNQLVNDEPLIYLDNAATTQKPNQVLETLRAYYQNDN--ANVHRGVHTLAERATAQYETAREKARQFLNAKSSKEILFTRGTTTGLNWVAKFAESILERGDEVLISIMEHHSNIIPWQQACERTGAKLVY-AYLKDGSLDLEDFYNKLSSKTKFVSLAHISNVLGCITPVKAIAERVHQVGAYMVVDGAQSAPHMAIDVQDLDCDFFALSGHKMLGPTGIGVLYGKESILDKMPPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNIAGAIAFGEALDYLTDVGMDEIHQYEQSLVSYVLPKLQAIDGLTIYGPSD-AESHVGVIAFN-LEGLHPHDVATAMDYEGVAVRAGHHCAQP-----LINHLGI-----HSAVRASFYFYNTKEDCDKLVDAIQKTKEFFNGTL |
| 3LVK Chain:A ((24-395)) | -------------------------IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY-----VRRKPRVRIEAQMHGGGHERG---------MRSGTLPVHQIVGMGEAYRIAKEEMATEMERL-RGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEG-----ESLIMALKDLAVSSGSAC---LEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213066 for 3084 contacts (-69.1/contact) +
2D Compatibility (PS) -38202 + (NN) -12617 + (LL) 3000
1D Compatibility (HY) -23200 + (ID) 4800
Total energy: -288885.0 ( -93.67 by residue)
QMean score : 0.481
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