Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSNQRIPSDGSNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
4BMP Chain:B ((2-111))
------LVAYDSMTGNVKRFIHKLNMPAVQIDED---LVIDEDFILI--TYTTGF----GNVPERVLDFL--ERNNEKLKGVSASGNRNWGDMFGASADKISTKYEVPIVSKFELSGTNNDVEYFKERVREIAT---
General information:
TITO was launched using:
RESULT:
Template:
4BMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71450 for 860 contacts (-83.1/contact) +
2D Compatibility (PS) -11380 + (NN) -1795 + (LL) 668
1D Compatibility (HY) -11600 + (ID) 2300
Total energy: -97857.0 ( -113.79 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4BMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMP-query.scw
PDB file :
Tito_Scwrl_4BMP.pdb
: