Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
1J9E Chain:A ((1-126))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDCRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
1J9E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70469 for 1002 contacts (-70.3/contact) +
2D Compatibility (PS) -13436 + (NN) -5690 + (LL) 528
1D Compatibility (HY) -7200 + (ID) 2200
Total energy: -98467.0 ( -98.27 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_1J9E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J9E-query.scw
PDB file :
Tito_Scwrl_1J9E.pdb
: