Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNSAANIRSFELALLFLLVFVAVYFVYLAVRDFKMSKNIRLLNWKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQEKNRLASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDMLGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLVAVSHDATEQEKEERERRL------FVSNVSHELRTPLTSVKSYLEAL--DEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYS----PDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVTYEEWEDVED |
| 4JAU Chain:A ((7-247)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKELERLKRIDRMKTEFIANISHELRTPLTVIKGYAEMIYNSLGELDLSTLKEFLETIIEQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVN-VLFESNVPCPVEAY---IDPTRIRQVLLNLLNNGVKYSKKDAPDK-YVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS---------GLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107043 for 1527 contacts (-70.1/contact) +
2D Compatibility (PS) -23747 + (NN) -10196 + (LL) 16668
1D Compatibility (HY) -21200 + (ID) 4000
Total energy: -149518.0 ( -97.92 by residue)
QMean score : 0.473
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