Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQSNHRYHGPLIEFEIEYSYIKIFPWIGLFISCIGLYASNFGDPLGFIKFIFSVCIFVNLVSIIISLFLKKYLIF
2W1R Chain:A ((132-153))
-----SYTVGPIVANGDPIGAVVIFSK-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2W1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4303 for 80 contacts (-53.8/contact) +
2D Compatibility (PS) -2301 + (NN) 584 + (LL) 4616
1D Compatibility (HY) -400 + (ID) 200
Total energy: -2004.0 ( -25.05 by residue)
QMean score : -0.109
(partial model without unconserved sides chains):
PDB file :
Tito_2W1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W1R-query.scw
PDB file :
Tito_Scwrl_2W1R.pdb
: