Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKEAGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVYSFTKQVTSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
4M0K Chain:A ((59-199))
--------------------------------ELLRLAIEALLEPFQEQEITKVVGIESRGFILGGMLAHHLDAGFVPVRKKGKLPYQT---LAESYQL-EYGTDTIEMHIDAIEPGDRVLIHDDVIATGGTAEATIRLVERAGGEVVGCAFLIELTGLQGRKRL-PAHVPVHTVLQL---------------
General information:
TITO was launched using:
RESULT:
Template:
4M0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122795 for 1133 contacts (-108.4/contact) +
2D Compatibility (PS) -15329 + (NN) -3077 + (LL) 4208
1D Compatibility (HY) -10000 + (ID) 1950
Total energy: -148943.0 ( -131.46 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4M0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M0K-query.scw
PDB file :
Tito_Scwrl_4M0K.pdb
: