Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHEHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
4M5J Chain:A ((4-160))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVR-ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
4M5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128285 for 1170 contacts (-109.6/contact) +
2D Compatibility (PS) -15947 + (NN) -6900 + (LL) 580
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -168752.0 ( -144.23 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4M5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5J-query.scw
PDB file :
Tito_Scwrl_4M5J.pdb
: