Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
2K9Y Chain:A ((537-551))
---------------------------VIGGVAVGVVLLLVL------
General information:
TITO was launched using:
RESULT:
Template:
2K9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2718 for 53 contacts (-51.3/contact) +
2D Compatibility (PS) -1369 + (NN) 992 + (LL) 2264
1D Compatibility (HY) -2800 + (ID) 150
Total energy: -3781.0 ( -71.34 by residue)
QMean score : 0.199
(partial model without unconserved sides chains):
PDB file :
Tito_2K9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9Y-query.scw
PDB file :
Tito_Scwrl_2K9Y.pdb
: