Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILTLFPEMF-APLEHSIVGKAKERGLLEINYHNFRE-NAEKSRHVDDEPYGGGQGMLLRAQPIFDTID---KIDAQKARVILLDPAGRTFDQDFAEELSKEDELIFICGHYEGYDER-IKSLVTDEVSLGDFVLTGGELAAMTMVDATVRLIPEVIGKETSHQDDSFSSGLLEYPQYTRPYDYLGMTVPDVLMSGHHENIRKWRLEQSLRKTLERRPDLLENYAMTDEERLILEKIKTEIERTDTVNEQNNL
4YVG Chain:A ((21-263))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS----------
General information:
TITO was launched using:
RESULT:
Template:
4YVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132534 for 1628 contacts (-81.4/contact) +
2D Compatibility (PS) -24398 + (NN) -7672 + (LL) 880
1D Compatibility (HY) -23200 + (ID) 6000
Total energy: -192924.0 ( -118.50 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4YVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVG-query.scw
PDB file :
Tito_Scwrl_4YVG.pdb
: