Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSINIAIDGPASSGKSTVAKIIAKNLNYTYLDTGAMYRCATYLALQHGYEAQDVSKILGLLAERPISFGKAEDGSQTVFIGTEEVTLAIRQNDVTNNVSWVSAIPEIREELVNQQRRIAKDGAIIMDGRDIGTVVLPDAELKIFLVASVDERAERRFKENQEKGIESDFETLKSEIAARDYKDSHREVSPLKAAEDAIEFDTTGVSIEGVVTFIQEKAEKIIDMKN
1KDP Chain:A ((8-213))
-----ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF-VSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKLA---
General information:
TITO was launched using:
RESULT:
Template:
1KDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73110 for 1647 contacts (-44.4/contact) +
2D Compatibility (PS) -21901 + (NN) -8875 + (LL) 440
1D Compatibility (HY) -17200 + (ID) 4350
Total energy: -124996.0 ( -75.89 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1KDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDP-query.scw
PDB file :
Tito_Scwrl_1KDP.pdb
: