Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKELGKTLRRLRKGKKVSISSLADEHLSKSQISRFERGESEITCSRLLNILDKLNITIDEFVSIHSKAHTHFFILLNRVRKYCAEKNVTKLVALLEDHNHKDYEKIMIKALIFSIDQSIEPNQEELARLTDYLFTVEQWGYYEIILLGNCSRLINYNTLFLLTKEMVNSFAYSEQNKTNKILVTQLAINCLIISIDHSYFEHSHYLIDKVRSLLQDEVNFYEKTVFLYVTGYYHLKLGDTSSGKEDMRKALQIFKYLGEDSFYNTYNEHYCQKVLGNNKEC
4YV6 Chain:B ((4-274))
---ELGKTLRRLRQGKQVSISSLADEHLSKSQISRFERGESEISCSRLLNLLDKLNITIDEFVSTHSKTHTHFFTLLSRVRKYYAEKNVAKLLKLLEDYAHKDYESTMIKAILSSIEPTVEPSEEEVTRLTDYLFSVEQWGYYEIILLGNCSRFINYNTLFLLTKEMVTSFAYSEQNKTNKTLVTQLSINCLIISIDYSYFDHSHYLIEKIEFLLRDELNFYEKTVFLYVHGYYKLKQGQV-SGKDDMRQALQIFKYLGEDALYYSYKEHYRKEV-------
General information:
TITO was launched using:
RESULT:
Template:
4YV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191394 for 1961 contacts (-97.6/contact) +
2D Compatibility (PS) -28117 + (NN) -10139 + (LL) 416
1D Compatibility (HY) -38400 + (ID) 10800
Total energy: -278434.0 ( -141.99 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4YV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YV6-query.scw
PDB file :
Tito_Scwrl_4YV6.pdb
: