Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
2BNF Chain:A ((6-240))
-KPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLN-VCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATK-VDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE----
General information:
TITO was launched using:
RESULT:
Template:
2BNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172723 for 1990 contacts (-86.8/contact) +
2D Compatibility (PS) -25731 + (NN) -12673 + (LL) 188
1D Compatibility (HY) -22000 + (ID) 5550
Total energy: -238489.0 ( -119.84 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_2BNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNF-query.scw
PDB file :
Tito_Scwrl_2BNF.pdb
: