Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLMWDVLTGKESVRTLKKQLDKELIHSVYAPRKRSKFHDIITSHHKEI----DEVAINTKTAIHKVANQLDEAIKGEFRSKVEESIESNQQKYNHL
4JNF Chain:A ((143-202))
--------------------------------QTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKL
General information:
TITO was launched using:
RESULT:
Template:
4JNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3442 for 322 contacts (-10.7/contact) +
2D Compatibility (PS) -5864 + (NN) -469 + (LL) 2752
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -9773.0 ( -30.35 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4JNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JNF-query.scw
PDB file :
Tito_Scwrl_4JNF.pdb
: