Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAH----IGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
1X06 Chain:A ((12-240))
---------------KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPV----DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------
General information:
TITO was launched using:
RESULT:
Template:
1X06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107379 for 1751 contacts (-61.3/contact) +
2D Compatibility (PS) -24470 + (NN) -12782 + (LL) 2032
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -164849.0 ( -94.15 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1X06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X06-query.scw
PDB file :
Tito_Scwrl_1X06.pdb
: