Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSGNTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFGFPMLGDFELRGTSSDVERIANIIVETLSNFKA
2XOD Chain:A ((1-107))
---MLVAYDSMTGNVKRFI----------HKLNMPAVQIGED----LVIDEDFI--LITYT---TGFGNVPERVL-----EFLERNN--EKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDVEYFKERVREIAT----
General information:
TITO was launched using:
RESULT:
Template:
2XOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69567 for 833 contacts (-83.5/contact) +
2D Compatibility (PS) -11448 + (NN) -3563 + (LL) 1840
1D Compatibility (HY) -10400 + (ID) 1750
Total energy: -94888.0 ( -113.91 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2XOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XOD-query.scw
PDB file :
Tito_Scwrl_2XOD.pdb
: