Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFINNYTLKIGNRILLENTNLDFEEGEINHLLGRNGSGKSQLAKDFIINR-GNYFSNDIYEDTL-----------------IISSYSNLP-----SDVTINDLERTIPW---KLSKEIYQLLN----INQISKTVKLKQLSDGQKQKVKLLVLLSLDKHIIILDEITNALDKKSVDEINVFLQNYIQYYPEKIIINISHDINNIRSLKGNYFLIDNQKICKVDTLDDAISWYLGE
4U00 Chain:A ((19-218))
--------------VLKGIHLEVAPGEKLVIIGPSGSGKSTLIR--TINRLEDFQEGEVVVDGLSVKDDRALREIRREVGMVFQQFNLFPHMTVLENVTLAPM-RVRRWPREKAEKKALELLERVGILDQARKYPA--QLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGG--MTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKEE
General information:
TITO was launched using:
RESULT:
Template:
4U00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61194 for 1221 contacts (-50.1/contact) +
2D Compatibility (PS) -18085 + (NN) -6244 + (LL) 1388
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -99385.0 ( -81.40 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4U00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U00-query.scw
PDB file :
Tito_Scwrl_4U00.pdb
: