Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYD----FIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTF-KNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGK----RNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
3RCM Chain:A ((3-248))
-LIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146068 for 1982 contacts (-73.7/contact) +
2D Compatibility (PS) -25074 + (NN) -15095 + (LL) 2748
1D Compatibility (HY) -17200 + (ID) 3400
Total energy: -204089.0 ( -102.97 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_3RCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCM-query.scw
PDB file :
Tito_Scwrl_3RCM.pdb
: