Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRRRGVMSDEFKYELAKDLGFYDTVKNGGWGEIRARDAGNMVKRAIEIAEQQMAQNQNNR
4GNZ Chain:A ((85-117))
-----------------------EAFENGLWGKINARDRGRLLYRLADVMEQHQEE-----
General information:
TITO was launched using:
RESULT:
Template:
4GNZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 178 for 126 contacts (1.4/contact) +
2D Compatibility (PS) -3658 + (NN) -1657 + (LL) 1472
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -5865.0 ( -46.55 by residue)
QMean score : 0.159
(partial model without unconserved sides chains):
PDB file :
Tito_4GNZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GNZ-query.scw
PDB file :
Tito_Scwrl_4GNZ.pdb
: