Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRILEKAPAKINLSLDVTRKRPDGYHEVEMIMTTIDLADRIELTELAEDEVRVSSHNRFVPDDQRNLAYQAAKLIKDRYNVKKGVSIMITKVIPVAAGLAGGSSDAAATLRGLNRLWNLNLSAETLAELGAEIGSDVSFCVYGGTALATGRGEKIKHISTPPHCWVILAKPTIGVSTAEVYRALKLDGIEHPDVQGMIEAIEEKSFQKMCS----RLGNVLESVTLDMHPEVAMIKNQMKRFGADAVLMSGSGPTVFGLVQYESKVQRIYNGLRGFCDQVYAVRMIGEQNALD |
2V2Q Chain:A ((9-246)) | ------SPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEIYIREGV---LRVET-NIGIPQEE-NLVYKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLREEHFVTPEYA-------EEKIQRIISGEVEEIENVLGDIARELYPEINEVYRFVEYLGFKP-FVSGSGSTVY------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98358 for 1924 contacts (-51.1/contact) +
2D Compatibility (PS) -25639 + (NN) -11904 + (LL) 4808
1D Compatibility (HY) -19200 + (ID) 3950
Total energy: -154243.0 ( -80.17 by residue)
QMean score : 0.394
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