Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHF-AGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTK-EGEIMAIRHNDLPIEGVQFHPE-SIMTSFGKEMLRNF---IETYRKEVIA
1M6V Chain:B ((204-379))
-------------NILRMLVDRGCRLTIVPAQT-SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASP----AAPLFDHFIELIEQYRK----
General information:
TITO was launched using:
RESULT:
Template:
1M6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91968 for 1298 contacts (-70.9/contact) +
2D Compatibility (PS) -18081 + (NN) -6814 + (LL) 2272
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -126291.0 ( -97.30 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1M6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6V-query.scw
PDB file :
Tito_Scwrl_1M6V.pdb
: