Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
1AD2 Chain:A ((5-228))
-----KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
1AD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117705 for 1740 contacts (-67.6/contact) +
2D Compatibility (PS) -24532 + (NN) -17519 + (LL) 616
1D Compatibility (HY) -17600 + (ID) 6000
Total energy: -182740.0 ( -105.02 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1AD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD2-query.scw
PDB file :
Tito_Scwrl_1AD2.pdb
: