Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEELFEWARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEIPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
4ZYD Chain:A ((37-145))
--------------------------------------------------------RDDSSFTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVMKIPWGKVMTYKQIADSLG--TSPRAVGMALSKNPILLIIPAHRVIAENG-IGGYSRGVKLKRALLELE-----------
General information:
TITO was launched using:
RESULT:
Template:
4ZYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62907 for 730 contacts (-86.2/contact) +
2D Compatibility (PS) -11791 + (NN) -6041 + (LL) 4736
1D Compatibility (HY) -11600 + (ID) 2000
Total energy: -89603.0 ( -122.74 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4ZYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZYD-query.scw
PDB file :
Tito_Scwrl_4ZYD.pdb
: