Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQNDFTFPSDTYL------LLYFWSMSCPNCHQ---LTDKVLQDIKDMNVKVIGVHVP-YIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2JZS Chain:A ((16-128))
--------------------------PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI------------
General information:
TITO was launched using:
RESULT:
Template:
2JZS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80769 for 694 contacts (-116.4/contact) +
2D Compatibility (PS) -11192 + (NN) -6260 + (LL) 2488
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -100433.0 ( -144.72 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2JZS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JZS-query.scw
PDB file :
Tito_Scwrl_2JZS.pdb
: