Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV
4MQD Chain:A ((1-132))MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV


General information:
TITO was launched using:
RESULT:

Template: 4MQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 679 -78749 -115.98 -596.58
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 1.00

3D Compatibility (PKB) : -115.98
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 1.00
QMean score : 0.736

(partial model without unconserved sides chains):
PDB file : Tito_4MQD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MQD-query.scw
PDB file : Tito_Scwrl_4MQD.pdb: