Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRYRTLLFDVDDTILDFQAA------EALAL-----------RLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLIDGAFD---LISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLD-TCWMNPD-MKPNVPEIIPTYEIRKLEELYHIL-NIENTVSC
2W4M Chain:A ((25-266))LSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYNTCITDLRTSHWE-------------EAIQETKGGAANRKLAEECYFLWKSTRLQHMTLAEDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGD-CVMVGDTLETDIQGGLNAGLKATVWINKNGIVPLKSSPVPHYMVSSVLELPALLQSIDCKV--


General information:
TITO was launched using:
RESULT:

Template: 2W4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1040 -111500 -107.21 -509.13
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -107.21
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.362

(partial model without unconserved sides chains):
PDB file : Tito_2W4M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2W4M-query.scw
PDB file : Tito_Scwrl_2W4M.pdb: